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Is there any encrypted embedded database (I don't care if it's SQL or NoSQL) that support NodeJS (enclosejs) or Golang?

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sqlcipher can be built for mapbox/sqlite3

or using go-sqlchiper

Also, using encryption with nedb is really easy, you just create a crypto cipher and perform the operation in and out. See this https://github.com/coolaj86/bitcrypt/blob/master/lib/bitcrypt.js#L27

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