I'm having trouble finding a notetaking application for Windows(and hopefully Linux) that handles code snippets well.
It can sync online, but I would prefer it to have good offline functionality. I would like to be able to store notebooks in various folders, by project, similar to how you would store .txt or .docx files.
I would choose Evernote, but that has never been great with formatting under windows, and only allows one account at a time, and doesn't really handle files in a way I like.
I need at least good indentation, but points for syntax highlighting and Markdown/ReText.